January 26, 2020

Coronavirus news

One reputable source of moderately technical information about the new coronavirus is the MRC Centre for Global Infectious Disease Analysis, at Imperial College, London.  They’ve worked on outbreak modelling and control advice for a long time, across a wide range of epidemics (including both previous coronavirus outbreaks: SARS and MERS).

Their latest (third) report says that it’s clear there has been sustained person-to-person transmission — a spreading epidemic — in China, and that basically nothing else is clear.

From the Discussion section

Whether transmission continues at the same rate now critically depends on the effectiveness of the intense control effort now underway in Wuhan and across China. We note the large body of evidence that suggests that the reproduction number for SARS changed considerably when populations became fully aware of the threat. If a similar change to contact patterns is occurring in this outbreak, rates of transmission are likely to be lower now than during the period for which these estimates were made, due to control measures and risk avoidance in the population. Whether the reduction in transmission is sufficient to reduce R to below 1–and thus end the outbreak –remains to be seen. Reports point to mildly symptomatic but infectious cases of 2019-nCoV, which were not a feature of SARS. Prompt detection and isolation of such cases will be extremely challenging, given the larger number of other diseases (e.g. influenza) which can cause such non-specific respiratory symptoms.While more severe cases will always need to be prioritised, control may depend upon successful detection, testing and isolation of suspect cases with the broadest possible range of symptom severity.Our results emphasise the need to track transmission rates over the next few weeks, especially in Wuhan. If a clear downwards trend is observed in the numbers of new cases, that would indicate that control measures and behavioural changes can substantially reduce the transmissibility of 2019-nCoV. Genetic data from Wuhan after the implementation of strong public health measures may also provide valuable insight into the patterns and rate of transmission.

Despite the recent decision of the WHO Emergency Committee to not declare this a Public Health Emergency of International Concern at this time, this epidemic represents a clear and ongoing global health threat. It is uncertain at the current time whether it is possible to contain the continuing epidemic within China. In addition to monitoring how the epidemic evolves, it is critical that the magnitude of the threat is better understood. Currently, we have only a limited understanding of the spectrum of severity of symptoms that infection with this virus causes, and no reliable estimates of the case fatality ratio –the proportion of cases who will die as a result of the disease. Characterising the severity spectrum, and how severity of symptoms relates to infectiousness, will be critical to evaluating the feasibility of control and the likely public health impact of this epidemic.

When they talk about ‘containing’ the epidemic within China, they don’t mean whether or not there are cases outside China — there are already are — they mean whether or not there’s sustained transmission from person to person outside China.

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Thomas Lumley (@tslumley) is Professor of Biostatistics at the University of Auckland. His research interests include semiparametric models, survey sampling, statistical computing, foundations of statistics, and whatever methodological problems his medical collaborators come up with. He also blogs at Biased and Inefficient See all posts by Thomas Lumley »

Comments

  • avatar

    Thanks for this Thomas. It’s hard to know if the measures being taken in China are because things are very bad, or because China takes more extreme measures (travel bans, blocking roads) because it is China.

    4 years ago